Introduction
Autosomal recessive cerebellar ataxias (ARCAs) are a group of neurodegenerative disorders characterized by a tremendous clinical and genetic heterogeneity.
1.Clinical features and molecular genetics of autosomal recessive cerebellar ataxias.
,2.- Anheim M.
- Tranchant C.
- Koenig M.
The autosomal recessive cerebellar ataxias.
Early-onset ARCAs represent a subgroup for which several disease genes have been identified as playing a role in processes such as DNA damage response, DNA repair, DNA transcription, DNA replication, RNA processing, protein folding and modification, and neurotransmitter metabolism, of which glutamate is an example.
1.Clinical features and molecular genetics of autosomal recessive cerebellar ataxias.
Glutamate receptors were recently implicated in two subforms of early-onset ARCA. First, mutations in
GRM1, encoding the metabotropic glutamate receptor 1, were found in patients of Roma origin with ARCA, characterized by developmental delay, intellectual disability, and a small brain.
3.- Guergueltcheva V.
- Azmanov D.N.
- Angelicheva D.
Autosomal-recessive congenital cerebellar ataxia is caused by mutations in metabotropic glutamate receptor 1.
Second, a homozygous partial deletion of
GRID2, encoding the ionotropic glutamate receptor delta 2, was found in a consanguineous Turkish family with early-onset ARCA, nystagmus, hypotonia with developmental delay in gross motor skills, encephalopathy with cerebellar ataxia, oculomotor apraxia, and pyramidal tract involvement.
4.- Utine G.E.
- Haliloglu G.
- Salanci B.
A homozygous deletion in GRID2 causes a human phenotype with cerebellar ataxia and atrophy.
Another recent study reported additional partial biallelic
GRID2 deletions in patients with early-onset ARCA, eye movement abnormalities, delayed speech, and intellectual disability.
5.- Hills L.B.
- Masri A.
- Konno K.
Deletions in GRID2 lead to a recessive syndrome of cerebellar ataxia and tonic upgaze in humans.
In addition, a heterozygous deletion of exon 1 and the upstream region of
GRID2 was found in an adult with spastic paraplegia, ataxia, frontotemporal dementia, and lower motor neuron involvement.
6.- Maier A.
- Klopocki E.
- Horn D.
De novo partial deletion in GRID2 presenting with complicated spastic paraplegia.
Prior evidence implicating
GRID2 in early-onset cerebellar ataxia was provided by two studies dealing with autoantibodies against the receptor after acute viral infection in two children.
7.- Shiihara T.
- Kato M.
- Konno A.
- Takahashi Y.
- Hayasaka K.
Acute cerebellar ataxia and consecutive cerebellitis produced by glutamate receptor delta2 autoantibody.
,8.- Shimokaze T.
- Kato M.
- Yoshimura Y.
- Takahashi Y.
- Hayasaka K.
A case of acute cerebellitis accompanied by autoantibodies against glutamate receptor delta2.
Apart from these few human cases, the link between
GRID2 and ARCA was already apparent in natural mutants in mouse. Indeed
hotfoot (
ho) mice are characterized by cerebellar ataxia and jerky movements of the hind limbs.
9.- Guastavino J.M.
- Sotelo C.
- Damez-Kinselle I.
Hot-foot murine mutation: behavioral effects and neuroanatomical alterations.
The
hotfoot locus has been mapped to chromosome 6,
,11.- Lalouette A.
- Christians E.
- Guénet J.L.
- Vriz S.
Construction of a high-resolution genetic map encompassing the hotfoot locus.
leading to the identification of the
Grid2 gene as the underlying disease gene.
12.- Lalouette A.
- Guénet J.L.
- Vriz S.
Hotfoot mouse mutations affect the delta 2 glutamate receptor gene and are allelic to lurcher.
The
Grid2 gene is a hotspot for deletions; at least 20 different recessive
hotfoot alleles have been described,
13.- Motohashi J.
- Kakegawa W.
- Yuzaki M.
Ho15J: a new hotfoot allele in a hot spot in the gene encoding the delta2 glutamate receptor.
most of which are deletions disrupting parts of the coding region of
Grid2.
14.- Wang Y.
- Matsuda S.
- Drews V.
- Torashima T.
- Meisler M.H.
- Yuzaki M.
A hot spot for hotfoot mutations in the gene encoding the delta2 glutamate receptor.
This hypermutability of the
Grid2 locus can probably be ascribed to the large size of the gene (1.4 Mb) and, more specifically, of the second intron.
All
hotfoot deletions remove parts of the N-terminal extracellular leucine/isoleucine/valine binding protein–like domain of the protein. This domain is crucial for correct trafficking of the protein out of the endoplasmic reticulum to the surface of Purkinje cells,
13.- Motohashi J.
- Kakegawa W.
- Yuzaki M.
Ho15J: a new hotfoot allele in a hot spot in the gene encoding the delta2 glutamate receptor.
,15.The delta2 glutamate receptor: a key molecule controlling synaptic plasticity and structure in Purkinje cells.
where it is selectively expressed
16.- Araki K.
- Meguro H.
- Kushiya E.
- Takayama C.
- Inoue Y.
- Mishina M.
Selective expression of the glutamate receptor channel delta 2 subunit in cerebellar Purkinje cells.
and thought to play an important role in the organization of parallel fiber–Purkinje cell synapses and associated long-term depression. However, the wild-type protein does not seem to form functional ion channels, nor does it bind to glutamate.
15.The delta2 glutamate receptor: a key molecule controlling synaptic plasticity and structure in Purkinje cells.
In the reported patients with
GRID2-associated ARCA, the first mutation is the counterpart of
hotfoot mutant
ho8J/ho13J, caused by a homozygous deletion of
GRID2 exons 3 and 4,
4.- Utine G.E.
- Haliloglu G.
- Salanci B.
A homozygous deletion in GRID2 causes a human phenotype with cerebellar ataxia and atrophy.
and the second mutation is compatible with mouse mutant
ho15J, caused by a compound heterozygous exon 2 deletion. Two other human deletions, one of exon 4 and the other of exon 1, do not have mouse counterparts.
Here we report a fifth human deletion mutant, characterized by a homozygous GRID2 deletion and mimicking the mouse ho15J mutant. This was found in a proband of consanguineous origin with early-onset ARCA and retinal dystrophy. Whole-exome sequencing in the proband demonstrated no defects other than the GRID2 deletion. Moreover, we demonstrated GRID2 messenger RNA (mRNA) and protein expression in both murine and human retina, suggesting a novel functional role of this receptor in the retina. Our study expands the expression domain of GRID2 and the clinical spectrum of hotfoot deletion mutants in human, which thus far involved only cerebellar and no retinal phenotypes. Finally, we provided further evidence for evolutionary conservation of a hotfoot fragile site between mice and humans.
Discussion
In this study we aimed to identify the underlying genetic cause of early-onset ARCA, eye movement disorder, and RD in a child of consanguineous origin. Our genetic studies revealed a 331-kb homozygous deletion removing the second exon of
GRID2, mimicking the deletion in
ho15J mice; a recent study showed that dysfunction of cerebellar neuronal circuits underlie the characteristic abnormality of hindlimb movements during locomotion in mice with this deletion.
24.- Takeuchi E.
- Sato Y.
- Miura E.
- Yamaura H.
- Yuzaki M.
- Yanagihara D.
Characteristics of gait ataxia in d2 glutamate receptor mutant mice, ho15J.
Involvement of
GRID2 mutations in human disease has been reported only recently, when our study was in a final stage. Utine et al.
4.- Utine G.E.
- Haliloglu G.
- Salanci B.
A homozygous deletion in GRID2 causes a human phenotype with cerebellar ataxia and atrophy.
reported a homozygous deletion of exons 3 and 4 in a consanguineous Turkish family with ARCA and cerebellar atrophy, whereas Hills et al.
5.- Hills L.B.
- Masri A.
- Konno K.
Deletions in GRID2 lead to a recessive syndrome of cerebellar ataxia and tonic upgaze in humans.
described two additional biallelic
GRID2 deletions of exon 2 (compound heterozygous) and exon 4 (homozygous) associated with ARCA and eye movements, mainly tonic upgaze. Maier et al.
6.- Maier A.
- Klopocki E.
- Horn D.
De novo partial deletion in GRID2 presenting with complicated spastic paraplegia.
reported a heterozygous deletion of exon 1 and the upstream region of
GRID2 in a 24-year-old man with spastic paraplegia, ataxia, frontotemporal dementia, and lower motor neuron involvement. Four of these six different human deletions have a concordant hotfoot allele in mice (
Figure 4), and their associated neurological phenotypes show significant overlap, which is summarized as follows: onset before the age of 1 year, a static neurological course, oculomotor impairment characterized by tonic upgaze, nystagmus, oculomotor dyspraxia, gross motor delay, a less affected mental developmental delay, and progressive cerebellar atrophy on brain magnetic resonance imaging (
Supplementary Table S1 and
Figure S3 online). Importantly, in our patient with ARCA an early-onset RD was shown, documented by decreased scotopic and photopic responses on ERG. Because this was not documented in the previously reported patients, we cannot completely rule out retinal involvement in these patients. The association of ARCA, cerebellar atrophy, and early-onset RD might point to a
GRID2 deletion as an underlying cause, which might prompt high-resolution copy number variation analysis. Likewise, ERG might be a valuable tool in the differential diagnosis of early onset ARCAs with cerebellar atrophy (
Supplementary Figure S3 online).
To support the hypothesis that the neurological and retinal phenotypes in the proband are a single entity, we performed whole-exome sequencing, but no obvious disease-causing mutations in known RD or other genes could be found (
Supplementary Tables S4 and S5 online). Moreover, expression of
GRID2 mRNA could be demonstrated, for the first time, in human adult retina and retinal pigment epithelium and in different developmental stages of murine retina. Similar to other retina-associated genes, low
Grid2 mRNA expression was found at early postnatal stages, followed by an increase during development, and reaching a steady state around adulthood. In addition, GRID2 immunostaining was shown both in human and murine retina, localizing to photoreceptor inner segments, the outer plexiform layer, and the ganglion cell layer. This pattern is in agreement with previous histological and physiological analyses, indicating that photoreceptor, bipolar, and ganglion cells use glutamate as their neurotransmitter. Many glutamate receptor types are known to be expressed in the retina. To the best of our knowledge, only one of them has been linked with retinal disease when mutated. Indeed, mutations in
GRM6, encoding the metabotrope glutamate receptor mGluR6, were found in autosomal recessive congenital night blindness.
25.- Dryja T.P.
- McGee T.L.
- Berson E.L.
Night blindness and abnormal cone electroretinogram ON responses in patients with mutations in the GRM6 gene encoding mGluR6.
Ionotropic glutamate receptors (iGluRs) represent another subtype, directly gating ion channels and mediating rapid synaptic transmission through either kainate/AMPA (α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) or N-methyl-D-aspartate receptors. Glutamate binding on iGluRs opens cation channels, depolarizing the postsynaptic cell membrane. Neurons within the OFF pathway (horizontal cells, OFF bipolar cells, amacrine cells, and ganglion cells) express functional iGluRs.
The more restricted expression observed in the human retinal section might be ascribed to the more peripheral, rod-rich location of the section. In addition, this might also suggest a differential expression in rods and cones.
Interestingly, Grid1, the first delta subunit of the iGluRs, was also shown to display sensorial expression, more specifically in the inner ear.
27.- Safieddine S.
- Wenthold R.J.
The glutamate receptor subunit delta1 is highly expressed in hair cells of the auditory and vestibular systems.
In line with this, mice lacking
Grid1 showed impaired hearing.
28.Orphan glutamate receptor delta1 subunit required for high-frequency hearing.
In addition,
Grid1 mRNA was detected in ganglion and bipolar retinal cells,
29.- Jakobs T.C.
- Ben Y.
- Masland R.H.
Expression of mRNA for glutamate receptor subunits distinguishes the major classes of retinal neurons, but is less specific for individual cell types.
reminiscent of the Grid2 immunostaining profile.
One of the drivers of retinal expression of GRID2 might be a
cis-regulatory element bound by CRX, a retina-specific transcription factor of which the regulome was characterized recently in mouse retina.
30.- Corbo J.C.
- Lawrence K.A.
- Karlstetter M.
CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors.
Indeed, two
cis-regulatory elements bound by CRX are located in the
GRID2 region, and one of them is removed by the homozygous deletion in our proband (
Supplementary Figure S4 online). Although we cannot exclude RD and concordant ERG changes in the
GRID2 deletion mutants based on the clinical data reported by Utine et al.,
4.- Utine G.E.
- Haliloglu G.
- Salanci B.
A homozygous deletion in GRID2 causes a human phenotype with cerebellar ataxia and atrophy.
Hills et al.,
5.- Hills L.B.
- Masri A.
- Konno K.
Deletions in GRID2 lead to a recessive syndrome of cerebellar ataxia and tonic upgaze in humans.
and Maier et al.,
6.- Maier A.
- Klopocki E.
- Horn D.
De novo partial deletion in GRID2 presenting with complicated spastic paraplegia.
the absence of a retinal phenotype in these patients might be explained by intact
cis-regulatory elements bound by CRX on at least one of the two alleles.
Of note, the murine
ho15J mutant,
13.- Motohashi J.
- Kakegawa W.
- Yuzaki M.
Ho15J: a new hotfoot allele in a hot spot in the gene encoding the delta2 glutamate receptor.
which is the counterpart of our human deletion, displays retinal degeneration, which is attributed to its genetic background characterized by homozygosity for the retinal degeneration 1 mutation of the
Pde6b gene (C3HJ).
5.- Hills L.B.
- Masri A.
- Konno K.
Deletions in GRID2 lead to a recessive syndrome of cerebellar ataxia and tonic upgaze in humans.
Hills et al.
5.- Hills L.B.
- Masri A.
- Konno K.
Deletions in GRID2 lead to a recessive syndrome of cerebellar ataxia and tonic upgaze in humans.
examined eye movements in both
ho15J and
Grid2 knockout mice, both showing larger spontaneous eye movements than their littermates. Therefore retinal phenotyping and immunostaining of the
Grid2 knockout mice, having a C57BL/6 background, might shed more light on the consequences of
Grid2 disruption in mouse retina.
With the identification of the new hotfoot mutant in humans, we provide further evidence for evolutionary conservation of a fragile site between mice and humans, which is likely attributed to the large size of the second intron in mice and humans. The hypermutability of this region also is illustrated by the high number of scattered structural variants, especially in the second intron, found in genomic databases such as Ensembl. Despite the large number of GRID2 deletion alleles, their allele frequency is estimated to be very low, taking into account the small number of hotfoot mutants in human reported so far. A bioinformatics study of the breakpoint regions of four different, molecularly characterized deletion alleles in human, including our proband, led to the conclusion that nonhomologous end-joining or a replicative-based repair mechanism are the most plausible mechanisms underlying the deletions, which is in agreement with the scattered location of the breakpoints.
In conclusion, we identified a new human hotfoot mutant associated with retinal involvement. We identified GRID2 as the underlying genetic cause of this entity, thereby providing further evidence for evolutionary conservation of a hotfoot fragile site between mouse and human. Moreover, we demonstrated GRID2 expression in both murine and human retina, providing evidence for a novel functional role of this iGluR in the retina. Our study expands the expression domain of GRID2 and the clinical spectrum of GRID2 hotfoot deletion mutants in humans, which thus far involved only cerebellar and no retinal phenotypes.