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Brief Communication| Volume 22, ISSUE 2, P432-436, February 2020

Genome and RNA sequencing in patients with methylmalonic aciduria of unknown cause

      Abstract

      Purpose

      Our laboratory has classified patients with methylmalonic aciduria using somatic cell studies for over four decades. We have accumulated 127 fibroblast lines from patients with persistent elevated methylmalonic acid (MMA) levels in which no genetic cause could be identified. Cultured fibroblasts from 26 of these patients had low [14C]propionate incorporation into macromolecules, possibly reflecting decreased methylmalonyl-CoA mutase function.

      Methods

      Genome sequencing (GS), copy-number variation (CNV) analysis, and RNA sequencing were performed on genomic DNA and complementary DNA (cDNA) from these 26 patients.

      Results

      No patient had two pathogenic variants in any gene associated with cobalamin metabolism. Nine patients had heterozygous variants of unknown significance previously identified by a next-generation sequencing (NGS) panel targeting cobalamin metabolic genes. Three patients had pathogenic changes in genes not associated with cobalamin metabolism (PCCA, EPCAM, and a 17q12 duplication) that explain parts of their phenotypes other than elevated MMA.

      Conclusion

      Genome and RNA sequencing did not detect any additional putative causal genetic defects in known cobalamin genes following somatic cell studies and the use of a targeted NGS panel. They did detect pathogenic variants in other genes in three patients that explained some aspects of their clinical presentation.

      Keywords

      INTRODUCTION

      Genome sequencing (GS) and transcriptome studies have become important diagnostic tools.
      • Cummings B.B.
      • Marshall J.L.
      • Tukainen T.
      • et al.
      Improving genetic diagnosis in Mendelian disease with transcriptome sequencing.
      ,
      • Richards S.
      • Aziz N.
      • Bale S.
      • et al.
      Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
      These technologies identify a vastly larger number of genetic variants than exome sequencing (ES), but they come with greater costs, and an additional need for high-performance computing for data analysis and storage.
      Inborn errors of cobalamin (Cbl) metabolism give rise to an array of clinical disorders characterized by elevations of methylmalonic acid (MMA) and/or homocysteine (Hcy) in blood and/or urine, and hematological, neurological, and other manifestations.
      • Watkins D.
      • Rosenblatt D.S.
      Inborn errors of cobalamin absorption and metabolism.
      Adenosylcobalamin (AdoCbl) is required as a cofactor for methylmalonyl-CoA mutase (MCM) in the production of succinyl-CoA from methylmalonyl-CoA. In the Vitamin B12 Laboratory at McGill University, somatic cell techniques have been established for the classification and diagnosis of inborn errors of cobalamin metabolism. These have been augmented with ES and targeted gene sequencing with gene panels to identify causal genetic variants in cobalamin-related genes. These methodologies have allowed reliable and efficient molecular diagnosis of cobalamin disorders,
      • Chu J.
      • Pupavac M.
      • Watkins D.
      • et al.
      Next generation sequencing of patients withmut methylmalonic aciduria: Validation of somatic cell studies and identification of 16 novel mutations.
      ,
      • Pupavac M.
      • Tian X.
      • Chu J.
      • et al.
      Added value of next generation gene panel analysis for patients with elevated methylmalonic acid and no clinical diagnosis following functional studies of vitamin B12 metabolism.
      as well as the discovery of novel genes implicated in the pathway.
      • Coelho D.
      • Kim J.C.
      • Miousse I.R.
      • et al.
      Mutations in ABCD4 cause a new inborn error of vitamin B12 metabolism.
      • Yu H.C.
      • Sloan J.L.
      • Scharer G.
      • et al.
      An X-linked cobalamin disorder caused by mutations in transcriptional coregulator HCFC1.
      • Pupavac M.
      • Watkins D.
      • Petrella F.
      • et al.
      Inborn error of cobalamin metabolism associated with the intracellular accumulation of transcobalamin-bound cobalamin and mutations in ZNF143, which codes for a transcriptional activator.
      • Quintana A.M.
      • Yu H.C.
      • Brebner A.
      • et al.
      Mutations in THAP11 cause an inborn error of cobalamin metabolism and developmental abnormalities.
      However, a set of patients has accumulated over the years in which no genetic diagnosis could be identified.
      In the present study, we report the results of GS and RNA sequencing in 26 patients with persistent elevated MMA, decreased fibroblast MCM function, and no diagnosis following somatic cell studies and targeted next-generation sequencing (NGS), to determine whether these analyses could identify any genetic defects that had been missed in these patients.

      Materials And Methods

      Patient selection and phenotyping

      Twenty-six subjects were selected from a larger cohort of 127 patients referred to the diagnostic laboratory at the Vitamin B12 Clinical Research Laboratory (Division of Medical Genetics, Department of Specialized  Medicine, McGill University Health Centre [MUHC]) due to elevated levels of methylmalonic acid in blood or urine, and in whom no diagnosis had been made. This project (MEDA-2000-943) was approved by the MUHC Research Ethics Board. Only results potentially related to the clinical findings of the patients were returned to the referring physicians; no incidental findings were returned. All fibroblasts had undergone testing for propionate incorporation (a measure of cellular MCM function), methyltetrahydrofolate incorporation (a measure of cellular methionine synthase function) and synthesis of cobalamin coenzyme derivatives from exogenous cyanocobalamin,
      • Watkins D.
      • Matiaszuk N.
      • Rosenblatt D.S.
      Complementation studies in the cblA class of inborn error of cobalamin metabolism: evidence for interallelic complementation and for a new complementation class (cblH).
      and sequencing with an expanded version of the Baylor Miraca Genetics Laboratories Cobalamin Metabolism Panel.
      • Pupavac M.
      • Tian X.
      • Chu J.
      • et al.
      Added value of next generation gene panel analysis for patients with elevated methylmalonic acid and no clinical diagnosis following functional studies of vitamin B12 metabolism.
      Selected patients had [14C]propionate incorporation values lower than 5.6 nmol/mg protein/18 h (reference range:10.8 ± 3.7nmol/mg protein/18 h). In all cases propionate incorporation was decreased compared with that of control fibroblasts assayed at the same time. A description of these patients can be found in Table 1. MMA levels in these patients were elevated compared with reference values, although not as high as in most patients diagnosed with inborn errors of cobalamin metabolism. Values for MMA in urine, when available, ranged from 5.5 to 88 mmol/mol creatinine (reference 0–3.6 mmol/mol creatinine); plasma MMA values ranged from 0.4 to 180,000 µmol/L (reference values 0–0.4 µmol/L). When noted, blood vitamin B12 was within the reference range; the reduced propionate incorporation values noted in cultured patient fibroblasts indicates that dietary cobalamin deficiency likely does not explain the clinically observed MMA elevations.
      Table 1Patient information
      PatientSexAgePropionateaMMAbClinical description
      WG2316F6 days5.0Urine: 5.7 µg/mg crAcute life-threatening event at home, eventually died; central nervous system and liver findings
      WG2368F7.5 months4.4Urine: 45 mmol/mol crSeizures starting at age 6 weeks
      WG2389F6.5 months5.5Urine: 37 mmol/mmol crStiffness on left side; FTT; dental delay; dysmorphic
      WG2701F7 months5.2High MMAFTT
      WG2731MN/A4.2Increased MMA in urineAutism; vegan; normal vitamin B12
      WG2740M6.5 months5.5Modest increase in urine MMAFTT; gallstones; mild hyperammonemia
      WG3092M9.5 months4.2Blood: 2.8 (ref: 0.1–0.6)Urine: 30.5 (ref: 0.8–2.4)Hypotonia; gross motor delay with onset in infancy; mild dysmorphic features; normal vitamin B12
      WG3221F48 days3.8Elevated urine MMAFTT; irritability; gastroesophageal reflux; normal vitamin B12
      WG3357M17 months4.8Slightly increased urine MMAMild developmental delay; low plasma carnitine; seizure-like episodes
      WG4131M1 month5.5Elevated C3 on NBS; elevated MMAElevated glycine
      WG4142M11 months5.2Elevated C3 on NBS; urine MMA ~5× upper limit of normalApparently healthy baby identified on NBS; normal vitamin B12
      WG4190M4 months3.8Chronic diarrhea; FTT; metabolic acidosis; macrocytic anemia
      WG2575M7 months3.7Urine: 30 µg/mg crFTT; weight loss at 4 months; hypotonia at 2 months
      WG2716M19 months3.2Blood: 0.443 µmol/LHypotonia; recurrent illness; acetone-like odor on breath
      WG2718F1 year3.0Urine: persistent MMADysgenesis of corpus collosum; developmental delay; sudden collapse with acute infection at age 1 year; neutropenia; acute lactic acidemia
      WG2727F11 months3.2Urine: 88 mmol/mol crHad to be woken for feedings; more active and alert after vitamin B12 therapy
      WG2837M5 months3.2Blood: 3.71 and 7.15 µmole/LApparently healthy infant with metabolic evaluation following unexplained death of a sibling; normal vitamin B12
      WG3086M9 months3.0Urine: 7 mmol/mol cr; blood: 1.24 µmol/LDevelopmental delay; seizures
      WG2686M7 months3.3Blood: 3–12 mmol/LSeizures; lactic acidosis
      WG2823F13 months3.2Urine: 31 (ref <5)Developmental delay; hypotonia; FTT; newborn jaundice; colic
      WG2324F13 years3.4Urine: elevatedBlood: 0.182 µmol/LModerate mental retardation; nonspecific neonatal problems
      WG2436F8 months2.7Persistently elevated in urine and bloodSeizures; developmental delay
      WG2625M8 months0.8Small amount of MMA in first urineFeeding difficulty; hyperammonemia; encephalopathy responsive to dialysis; neutropenia; thrombocytopenia; acidosis; propionic acidemia
      WG3099F4 months2.4Blood: 1.52 µmol/LHypotonia; gastroesophageal reflux; acute life-threatening respiratory event at age 3 months; normal vitamin B12
      WG3162M7 months2.4Blood: 0.901 µmol/LDeveloped pneumonia and swelling around spinal cord after minor motor vehicle accident; normal vitamin B12
      WG3123F4 months1.0MMA in urineDevelopmental delay; movement disorder; infantile spasms
      Information provided from requisitions and clinical data provided at the time of submission of fibroblast samples.
      C3 propionylcarnitine,cr creatinine, FTT failure to thrive, MMA methylmalonic acid, NBS newborn screen.
      aUnits: nmol propionate incorporated/mg protein/18 h.
      bReference values: urine: 0–3.6 mmol/mol cr; blood: 0–0.4 µmol/L

      Genomic DNA and RNA preparation

      Genomic DNA was extracted from patient fibroblasts using the FlexiGene DNA Kit (Qiagen). Concentration and purity of DNA were assessed using the BioDrop µLITE spectrophotometer (BioDrop, UK) and the Qubit Fluorometer (Thermo Fisher). Extracts were stored at −20 °C. For RNA sequencing studies, confluent fibroblasts were harvested, pelleted, and dissolved in 1 mL of Trizol Lysis Reagent (Sigma Aldrich) and immediately frozen at −80 °C. The suspensions were used to extract total RNA using the miRNAeasy Mini Kit (Qiagen).

      Sequencing and CNV analysis

      Genomic DNA and complementary DNA (cDNA) were used for GS and RNA sequencing at the McGill University and Genome Quebec Innovation Center using the Illumina polymerase chain reaction (PCR)-free shotgun sequencing technology.
      • Witkowski L.
      • Carrot-Zhang J.
      • Albrecht S.
      • et al.
      Germline and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type.
      ,
      • Guéant J.L.
      • Chéry C.
      • Oussalah A.
      • et al.
      A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients.
      GS was performed on 500 ng to 1.5 μg of genomic DNA using a PCR-free protocol. Libraries were sequenced on the Illumina HiSeq X platform with 151-bp paired-end reads. Results were received in uBAM file format (unaligned, raw sequencing reads). Quality control metrics were tested and showed an average of 98% of mapped reads per sample. Data analysis followed the Genome Analysis Toolkit (GATK) best practices guidelines that were developed in the Data Sciences Platform at the Broad Institute (https://software.broadinstitute.org/gatk/best-practices/). The uBAM files were then processed through a customized data analysis pipeline to generate a filtered variant call set. Copy-number variations (CNVs) were detected using PopSV.
      • Monlong J.
      • Girard S.L.
      • Meloche C.
      • et al.
      Global characterization of copy number variants in epilepsy patients from whole genome sequencing.

      Variant analysis and interpretation

      Variants (single-nucleotide variants [SNVs] and indels) were filtered based on quality metrics, allele frequency, function prediction scores, and clinical relevance of variants. More specifically, for quality metrics, a variant is required to satisfy all criteria that include 62.5% or more of the samples to have called genotypes, an allele count equal to or less than 5 among all samples, greater than or equal to 10× coverage in the sample of interest, greater than or equal to 3 alternative allele reads. For allele frequency, a variant is required to satisfy all criteria, including an overall allele frequency in gnomAD less than 0.5%, African allele frequency in gnomAD less than 1%, European (non-Finnish) allele frequency in gnomAD less than 1%, East Asian allele frequency in gnomAD less than 1%, number of homozygotes in gnomAD less than 5, and not more than 5% minor allele frequency in each population. In addition to an extensive set of function prediction scores that were added (Supplemental Data 1) a variant was required to satisfy at least one of the criteria listed in these scores to be called.

      Clinical interpretation of variants

      Variant interpretation was applied according to the American College of Medical Genetics and Genomics guidelines for variant prioritization.
      • Richards S.
      • Aziz N.
      • Bale S.
      • et al.
      Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
      Specifically, when examining variants in genes potentially related to the phenotype, whether they had previously been reported as pathogenic, likely pathogenic, or a variant of unknown significance was taken into consideration. A systematic approach was applied by starting with ClinVar significance, allele frequency databases, disease association, and gene function. CNVs were manually inspected using DECIPHER.

      RESULTS

      We confirmed heterozygous variants of unknown significance in nine patients (Table 2) that had been previously detected by the Baylor Miraca panel. However, analysis did not identify a second pathogenic variant in any of these patients. No novel putative pathogenic variants were discovered in any known cobalamin gene, nor were biallelic variants in genes of unknown function that might represent previously unknown cobalamin metabolic genes identified. Analysis of mitochondrial DNA identified no putative pathogenic variants.
      Table 2Patients with variants previously detected by a cobalamin gene panel
      PatientSexGeneNucleotide variantAmino acid variant
      WG2436FGIFc.435_437delGAAp.K145del
      WG2625MCUBNc.9986C>Tp.S3329L
      WG2701FMTHFRc.1333C>Tp.R445W
      WG2731n/aACSF3c.854C>Tp.P285L
      WG2837MACSF3c.1672C>Tp.R558W
      WG3086aMCUBNc.2594G>Ap.S865N
      CUBNc.6469A>Gp.N2157D
      WG3357MHCFC1c.4442C>Tp.T1481M
      WG4131bMCD320c.262_264delGAGp.E88del
      CD320c.658G>AP.G220R
      WG3023FHCFC1c.4475C>Tp.P1492L
      All detected sequence variants were heterozygous. DNA nucleotide  + 1 is the A of the ATG translation initiation codon in the reference sequence. Reference sequences for the variants described in the table are NM_005142.2, GIF; NM_001081.3, CUBN; NM_005957.4,MTHFR; NM_174917.4, ACSF3; NM_005334.2, HCFC1; NM_016579.3, CD320; NM_000282.3, PCCA; NM_002354.2, EPCAM.
      aVariant c.6469A>G lies outside the region of CUBN associated with cobalamin defects, and clinical phenotype does not match that of CUBN deficiency.
      • Chu J.
      • Pupavac M.
      • Watkins D.
      • et al.
      Next generation sequencing of patients withmut methylmalonic aciduria: Validation of somatic cell studies and identification of 16 novel mutations.
      bClinical phenotype does not match that of CD320 deficiency.
      • Chu J.
      • Pupavac M.
      • Watkins D.
      • et al.
      Next generation sequencing of patients withmut methylmalonic aciduria: Validation of somatic cell studies and identification of 16 novel mutations.
      In three patients, candidate variants that could explain part of the non–cobalamin-related clinical phenotype were identified. WG2625 was found to be compound heterozygous for a nonsense variant (c.1749_1750delGGinsTT (p.Glu584*; NM_000282.3) and an intragenic 9-kb duplication (Supplementary Fig. 1) affecting exon 21 of PCCA, which encodes the α-subunit of propionyl-CoA carboxylase. These variants have not been previously reported. RNA-seq indicated reduced expression of the allele carrying the missense change, suggesting nonsense-mediated decay. In WG4190, GS revealed a homozygous insertion (c.499dup, p.Gln167fs) inEPCAM (NM_002354.2), which results in a frame shift leading to creation of a stop codon. which results in a frameshift leading to creation of a stop codon. Biallelic variants in this gene have previously been associated with diarrhea-5 with congenital tufting enteropathy, a rare autosomal recessive intractable diarrhea of infancy.
      • Sivagnanam M.
      • Mueller J.L.
      • Lee H.
      • et al.
      Further evidence for EpCAM as the gene for congenital tufting enteropathy.
      Since EPCAM is only weakly expressed in fibroblasts, RNA-seq analysis was uninformative. GS and CNV analysis of WG2716 revealed a duplication at chromosome 17q12 encompassing approximately 1.4 Mb, spanning positions chr17: 34,815,001 to 36,250,000 (Supplementary Fig. 2). Duplications in this region have been associated with a syndrome with variable presentation, with neurologic, behavioral, and dysmorphic features.
      • Bierhals T.
      • Maddakuri S.B.
      • Kutsche K.
      • Girisha K.M.
      Expanding the phenotype associated with 17q12 duplication: case report and review of the literature.
      ,
      • Kamath A.
      • Linden S.C.
      • Evans F.M.
      • et al.
      Chromosome 17q12 duplications: further delineation of the range of psychiatric and clinical phenotypes.

      DISCUSSION

      Somatic cell studies, including complementation analysis and gene panel analysis, are both used for diagnosis of inherited cobalamin metabolic disorders. In this study, we used GS and RNA-seq to assess the added diagnostic value of these methods in a panel of 26 patients with elevated MMA who could not be diagnosed using other technologies. In this cohort of patients, elevated MMA and low [14C]propionate incorporation suggested a possible disorder of cobalamin metabolism even in the absence of identified causal variants in any known cobalamin metabolic gene.
      Propionate incorporation in these patients was less than 5.6 nmol/mg protein/18 h, more than one standard deviation less than the mean value in fibroblasts from individuals with no inborn error of cobalamin metabolism (10.8 ± 3.7 nmol/mg/18 h). In 14 patients, no sequence variants of interest were found. In nine patients, heterozygous variants of unknown significance (VUS) in cobalamin metabolic genes (previously identified by the gene panel) were confirmed. In three patients, variants in genes not known to have any role in cobalamin metabolism were identified. These findings could explain some clinical findings in these patients unrelated to MMA metabolism.
      Patient WG2625 was reported to have vitamin B12-responsive methylmalonic acidemia, neutropenia, thrombocytopenia, and ketotic hyperglycinemia. His first urine was reported to contain elevations of both MMA and propionic acid. Compound heterozygous sequence variants in PCCA, which encodes the α-subunit of propionyl-CoA carboxylase, were identified in this patient.
      • Rivera-Barahona A.
      • Navarrete R.
      • Garcia-Rodriguez R.
      • et al.
      Identification of 34 novel mutations in propionic acidemia: functional characterization of missense variants and phenotype associations.
      While neither variant identified in the present study has been previously reported, both are predicted to be deleterious. The c.1749_1750insTT variant results in a frameshift and creation of a premature stop codon; RNA-seq indicates that this variant allele is not expressed. The 9-kb duplication could not be detected by exome sequencing, demonstrating the importance of additional technologies to detect causal sequence changes such as small CNVs. Identification of biallelic PCCA variants in WG2625 suggests that propionic acidemia, rather than methylmalonic acidemia, is the correct diagnosis in this case, although the cause of the apparent elevation of MMA in the patient is unknown.
      Patient WG4190 had chronic diarrhea, failure to thrive, metabolic acidosis, and macrocytic anemia. GS revealed a homozygous frameshift variant inEPCAM, which encodes the epithelial cellular adhesion molecule EpCAM. Biallelic EPCAM variants have been associated with congenital tufting enteropathy.
      • Sivagnanam M.
      • Mueller J.L.
      • Lee H.
      • et al.
      Further evidence for EpCAM as the gene for congenital tufting enteropathy.
      This finding fits the patient’s phenotype of chronic diarrhea but cannot explain the observed methylmalonic aciduria.
      Patient WG2716 was reported to have hypotonia, head lag, and recurrent illnesses associated with an acetone-like odor to his breath. He also suffered from severe eczema, mild developmental delay, difficulty in gaining weight, and intermittently increased MMA in blood and urine. GS and RNA-seq identified a duplication affecting chromosome 17q12. Submicroscopic duplications of this region have been associated with a clinically variable autosomal dominant syndrome of developmental delay and other neurologic and behavioral problems as well as dysmorphology affecting the brain, kidneys, and other organs.
      • Bierhals T.
      • Maddakuri S.B.
      • Kutsche K.
      • Girisha K.M.
      Expanding the phenotype associated with 17q12 duplication: case report and review of the literature.
      ,
      • Kamath A.
      • Linden S.C.
      • Evans F.M.
      • et al.
      Chromosome 17q12 duplications: further delineation of the range of psychiatric and clinical phenotypes.
      The duplication identified in WG2716 may underlie neurologic aspects of his clinical presentation, but cannot explain the patient’s elevated MMA; no gene involved in cobalamin metabolism has been localized to chromosome 17q12.
      Our results show that somatic cell studies and gene panel testing are sufficient for diagnosis of inborn errors of cobalamin metabolism, since GS and RNA-seq did not result in any additional diagnoses. Elevated MMA levels in these patients remain unexplained. However, levels could be elevated for reasons not related to cobalamin metabolism, as occurs in patients with variants in ACSF3,
      • Levtova A.
      • Waters P.J.
      • Buhas D.
      • et al.
      Combined malonic and methylmalonic aciduria due toACSF3 mutations: benign clinical course in an unselected cohort.
      although this would not explain the decreased MCM function, as shown by decreased propionate incorporation. The non–cobalamin-related findings detected in three patients could not have been detected using the gene panel, and show the added benefit of using GS to achieve a clinical diagnosis. NGS panels are now usually the first-line diagnostic approach for these disorders. Somatic cell studies including complementation analysis remain useful in cases in which clearly pathogenic sequence variants are not detected.

      Ethics declarations

      Disclosure

      The authors declare no conflicts of interest.

      Acknowledgements

      We thank the patients and their families as well as the physicians who submitted patients to the laboratory for diagnosis. We also thank Jocelyne Tossa, Keo Phommarinh, and Sina Yak for laboratory assistance; Brian Gilfix and Jacek Majewski for helpful discussions; and Judith St-Onge for her expertise and guidance. We thank Calcul Québec and Compute Canada for high-performance computing resources for genomic data analysis and storage. This research was supported by Operating Grant PJT-148661 from the Canadian Institutes of Health Research and is a publication of the Hess B. and Diane Finestone Laboratory in Memory of Jacob and Jenny Finestone.

      Additional information

      Publisher’s note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

      References

        • Cummings B.B.
        • Marshall J.L.
        • Tukainen T.
        • et al.
        Improving genetic diagnosis in Mendelian disease with transcriptome sequencing.
        10.1126/scitranslmed.aal5209
        Sci Transl Med. 2017; 9: 386
        • Richards S.
        • Aziz N.
        • Bale S.
        • et al.
        Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
        10.1038/gim.2015.30
        Genet Med. 2015; 17: 405-424
        • Watkins D.
        • Rosenblatt D.S.
        Inborn errors of cobalamin absorption and metabolism.
        1:CAS:528:DC%2BC3MXjvFOgtr0%3D
        10.1002/ajmg.c.30288
        Am J Med Genet C Semin Med Genet. 2011; 157: 33-44
        • Chu J.
        • Pupavac M.
        • Watkins D.
        • et al.
        Next generation sequencing of patients withmut methylmalonic aciduria: Validation of somatic cell studies and identification of 16 novel mutations.
        1:CAS:528:DC%2BC28Xos1Wmu70%3D
        10.1016/j.ymgme.2016.05.014
        Molec Genet Metab. 2016; 118: 264-271
        • Pupavac M.
        • Tian X.
        • Chu J.
        • et al.
        Added value of next generation gene panel analysis for patients with elevated methylmalonic acid and no clinical diagnosis following functional studies of vitamin B12 metabolism.
        1:CAS:528:DC%2BC28XhsFylsbc%3D
        10.1016/j.ymgme.2016.01.008
        Mol Genet Metab. 2016; 117: 363-368
        • Coelho D.
        • Kim J.C.
        • Miousse I.R.
        • et al.
        Mutations in ABCD4 cause a new inborn error of vitamin B12 metabolism.
        1:CAS:528:DC%2BC38Xht1GhtrzO
        10.1038/ng.2386
        Nat Genet. 2012; 44: 1152-1155
        • Yu H.C.
        • Sloan J.L.
        • Scharer G.
        • et al.
        An X-linked cobalamin disorder caused by mutations in transcriptional coregulator HCFC1.
        10.1016/j.ajhg.2013.07.022
        Am J Hum Genet. 2013; 93: 506-514
        • Pupavac M.
        • Watkins D.
        • Petrella F.
        • et al.
        Inborn error of cobalamin metabolism associated with the intracellular accumulation of transcobalamin-bound cobalamin and mutations in ZNF143, which codes for a transcriptional activator.
        1:CAS:528:DC%2BC28Xhtlansb7F
        10.1002/humu.23037
        Hum Mutat. 2016; 37: 976-982
        • Quintana A.M.
        • Yu H.C.
        • Brebner A.
        • et al.
        Mutations in THAP11 cause an inborn error of cobalamin metabolism and developmental abnormalities.
        1:CAS:528:DC%2BC1cXjt1Sqtrg%3D
        10.1093/hmg/ddx157
        Hum Mol Genet. 2017; 26: 2838-2849
        • Watkins D.
        • Matiaszuk N.
        • Rosenblatt D.S.
        Complementation studies in the cblA class of inborn error of cobalamin metabolism: evidence for interallelic complementation and for a new complementation class (cblH).
        1:CAS:528:DC%2BD3cXlsFGksbk%3D
        10.1136/jmg.37.7.510
        J Med Genet. 2000; 37: 510-513
        • Witkowski L.
        • Carrot-Zhang J.
        • Albrecht S.
        • et al.
        Germline and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type.
        1:CAS:528:DC%2BC2cXks12msLs%3D
        10.1038/ng.2931
        Nat Genet. 2014; 46: 438-445
        • Guéant J.L.
        • Chéry C.
        • Oussalah A.
        • et al.
        A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients.
        10.1038/s41467-017-02306-5
        Nat Commun. 2018; 9: 67
        • Monlong J.
        • Girard S.L.
        • Meloche C.
        • et al.
        Global characterization of copy number variants in epilepsy patients from whole genome sequencing.
        10.1371/journal.pgen.1007285
        PLoS Genet. 2018; 14: e1007285
        • Sivagnanam M.
        • Mueller J.L.
        • Lee H.
        • et al.
        Further evidence for EpCAM as the gene for congenital tufting enteropathy.
        10.1002/ajmg.a.33186
        Am J Med Genet A. 2008; 152A: 222-224
        • Bierhals T.
        • Maddakuri S.B.
        • Kutsche K.
        • Girisha K.M.
        Expanding the phenotype associated with 17q12 duplication: case report and review of the literature.
        10.1002/ajmg.a.35730
        Am J Med Genet A. 2013; 161A: 352-359
        • Kamath A.
        • Linden S.C.
        • Evans F.M.
        • et al.
        Chromosome 17q12 duplications: further delineation of the range of psychiatric and clinical phenotypes.
        10.1002/ajmg.b.32643
        Am J Med Genet B. 2018; 177B: 520-528
        • Rivera-Barahona A.
        • Navarrete R.
        • Garcia-Rodriguez R.
        • et al.
        Identification of 34 novel mutations in propionic acidemia: functional characterization of missense variants and phenotype associations.
        1:CAS:528:DC%2BC1cXhvVejsLzP
        10.1016/j.ymgme.2018.09.008
        Mol Genet Metab. 2018; 125: 266-275
        • Levtova A.
        • Waters P.J.
        • Buhas D.
        • et al.
        Combined malonic and methylmalonic aciduria due toACSF3 mutations: benign clinical course in an unselected cohort.
        1:CAS:528:DC%2BC1cXhtVOlsr3O
        10.1002/jimd.12032
        J Inherit Metab Dis. 2019; 42: 107-116

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